Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015935745.1_cds_XP_016481494.1_72816
CDS Infomation

[gene=LOC107802495] [db_xref=GeneID:107802495] [protein=rab proteins geranylgeranyltransferase component A 1-like] [protein_id=XP_016481494.1] [location=join(6783..7480,8011..8133,8881..8980,9960..9998,10113..10359,10440..10515,11014..11212,12966..13052,13268..13354)] [gbkey=CDS]
Sequence

ATGGATGAAACTGCGTCGTATCCTCTAATTGAACCATCCAATTTCGACCTTATAGTGGTC
GGCACCGGTCTGCCGGAGTCCATACTAGCCGCCGCTGCCTCCGCCGCCGGAAAATCAGTC
CTTCACCTGGACCCTAACCCTTCATACGGCAGCCACTATGCTTCTTTTCCCCTTCACGAA
TTCATTTCATATATCCAATCTCAATCCTCCTCCGAACCCTCAATTCCACAACCCGACACC
GATTCGGGTTTTACCCGAGTTCCTCTAACCACCCGCCCGCTCTACTCCTCCGTCGAAATC
ACTTCTTACTCCTCGGAACCCTTGGAACAATCGCGAAAGTTTAACATTGATTTGAGTGGG
CCCAGGGTTTTGTTGTGTGCTGATGCCATGATTAATTTACTTTTGAAATCAGAGGTGAAT
CAATACATGGAGTTCAAGAGCATTGACGGGAGTTTTTTCTACGATGGTGAGGGCAATTTG
GAGAATGTACCTGATTCGCGTAGCGCGATATTTATGGACCGGAAACTAAGCTTTACGGAG
AAGACTCAGTTGATGGGATTCTTCAAGCTGGTGCAAGGGCATTTTGAAGCAGCAGCAGCT
GCTGATGGTGGGGAGAGTAAGAGCATTTCAGAGGAGGAGTTAGAGAGTCCGTTTGTGGAG
TTTTTAAGCAAAATGGGGCTTTCTTCTAAGCTAAAATCGATTATTCTATATGCAATAGCA
ATGGCAGATTATGACCAAGAGAATGGGGATGTTTGCAAAAGTGTTCTTAAGACAAAAGAT
GGTATTGATCGGTTGGCCCTTTATCACTCATCCGTTGGCAGGTTTCCTAATGCACCTGGT
GCTATGATTTACCCCATTTATGGTCAAGGGGAACTTCCACAGGCCTTTTGTCGTCGTGCT
GCAGTAAAAGGATGCATTTATGTTCTTCGGATGCCTGTTAATTCTCTCCTCATGGACAAG
GCTACTGGGAATTACAAGGGTGTTCGCTTGGCTTCGGAACAAGAATTGTACAGCCATAAG
CTGATATTAGCTTCATCTTTTGTGTTTCAATTACCACGACCTCATTCTTCACCTGATGCT
CAGCAAAATGTTTATTGTGATTTTGGCTCGAAAAATACAACCGAGAAGCTGGCTAGGAGT
GTATGCATCACAAAGCACTCTTTGAAATTGGATAAAGCCAATTGTCTGGCATTTTTTCCT
CCTCGATCTCTCTTCCCTGAGCAGGTCACAGCAATCCATGTCCTTCAGCTGAGTAGCAAT
GCTGCTGTTTGCCCCTCTGGAATGTTTTTGACTTATCTCTCAGCCATATGCAAGGATGAT
GTTCAGGGGAAGAAGCTATTACATGCAGCTATCAACGCACTGTTTTGCATTCCTGTTTCT
GGAAGCTCTGAAAATGATAATTCTGCGGAGAACCAAAGTGAAACTAGAGATGCAAAACCT
GCTTTACTTTGGAGTGTCTTGTATATTCAAGAGCTTACTAAGTTTCAGGATGTTTTAGAT
AACATCATTTCTGCCTCCATGCCAGATGCGAGTCCATACTACCATGATCTTCTGGGTGCT
ACGGAAAAGATATTTGAAGAGCTGTACTCTGGTGAAGTATTCTTTCCCAAGACAGCCTCA
TTGGAGGAGGGTGCTGTCGAAGAGCTCGAGGACTAG

Peptide Sequence

PEP ID

XP_016481494.1
PEP Infomation

PREDICTED: rab proteins geranylgeranyltransferase component A 1-like [Nicotiana tabacum]
Sequence

MDETASYPLIEPSNFDLIVVGTGLPESILAAAASAAGKSVLHLDPNPSYGSHYASFPLHE
FISYIQSQSSSEPSIPQPDTDSGFTRVPLTTRPLYSSVEITSYSSEPLEQSRKFNIDLSG
PRVLLCADAMINLLLKSEVNQYMEFKSIDGSFFYDGEGNLENVPDSRSAIFMDRKLSFTE
KTQLMGFFKLVQGHFEAAAAADGGESKSISEEELESPFVEFLSKMGLSSKLKSIILYAIA
MADYDQENGDVCKSVLKTKDGIDRLALYHSSVGRFPNAPGAMIYPIYGQGELPQAFCRRA
AVKGCIYVLRMPVNSLLMDKATGNYKGVRLASEQELYSHKLILASSFVFQLPRPHSSPDA
QQNVYCDFGSKNTTEKLARSVCITKHSLKLDKANCLAFFPPRSLFPEQVTAIHVLQLSSN
AAVCPSGMFLTYLSAICKDDVQGKKLLHAAINALFCIPVSGSSENDNSAENQSETRDAKP
ALLWSVLYIQELTKFQDVLDNIISASMPDASPYYHDLLGATEKIFEELYSGEVFFPKTAS
LEEGAVEELED

Transcript Sequence

Gene sequence data has not been registered.